DIAMOND DeepClust Data

Download Instructions

Make sure you have enough disk space available (2 TB for downloading, up to 5 TB while decompressing all files) and a stable high-bandwidth Internet connection. The use of a download manager is recommended on desktop systems. In addition, the following options are available:

An S3 client (e.g. Cyberduck, minio-client, rclone) can be used with the URL s3://objectstore.hpccloud.mpcdf.mpg.de/deepclust/

To download via https on the command line, the following `wget` command can be used:

wget --recursive --level=1 --execute robots=off --no-parent --no-host-directories --cut-dirs=2 https://objectstore.hpccloud.mpcdf.mpg.de/deepclust/index.html

The total compressed size of this download resource is 1.906.886 MB.

File Description

joined_with_index_RowGroupFinal.parquet: Parquet file conatining all sequences clustered with DIAMOND DeepClust mentioned in the publication.

clust_index_RowGroup.parquet: Index file indicating where in joined_with_index_RowGroupFinal.parquet a cluster can be found.

persistent: DuckDB Database created from clust_index_RowGroup.parquet.

SeqIdMapClustId.parquet: Parquet file containing all sequence IDs from the DeepClust Database which then can be mapped onto the cluster to which they have been assigned.

(These files are contained within the archive DeepClustParquet.tar.zst.)

For more information see: https://github.com/drostlab/deepclust_dataretrieval

clust_bigg_2.mmseqs: MMseqs2 formatted Database containing all clusters from the DeepClust Database with more than two members to use in the context of Protein Structure Prediction and ColabFold.

clust_bigg2.fa: FASTA File containg all centroids representing clusters with more than two members.

(These files are contained within the archive clust_bigg2_mmseqs_db.tar.zst.)

For more information see: https://github.com/drostlab/deepclust_colabfold

Name Size Modified
DeepClustParquet.md5sum 4 KB
DeepClustParquet.readme 537 bytes
DeepClustParquet.tar.zst.00 20 GB
DeepClustParquet.tar.zst.01 20 GB
DeepClustParquet.tar.zst.02 20 GB
DeepClustParquet.tar.zst.03 20 GB
DeepClustParquet.tar.zst.04 20 GB
DeepClustParquet.tar.zst.05 20 GB
DeepClustParquet.tar.zst.06 20 GB
DeepClustParquet.tar.zst.07 20 GB
DeepClustParquet.tar.zst.08 20 GB
DeepClustParquet.tar.zst.09 20 GB
DeepClustParquet.tar.zst.10 20 GB
DeepClustParquet.tar.zst.11 20 GB
DeepClustParquet.tar.zst.12 20 GB
DeepClustParquet.tar.zst.13 20 GB
DeepClustParquet.tar.zst.14 20 GB
DeepClustParquet.tar.zst.15 20 GB
DeepClustParquet.tar.zst.16 20 GB
DeepClustParquet.tar.zst.17 20 GB
DeepClustParquet.tar.zst.18 20 GB
DeepClustParquet.tar.zst.19 20 GB
DeepClustParquet.tar.zst.20 20 GB
DeepClustParquet.tar.zst.21 20 GB
DeepClustParquet.tar.zst.22 20 GB
DeepClustParquet.tar.zst.23 20 GB
DeepClustParquet.tar.zst.24 20 GB
DeepClustParquet.tar.zst.25 20 GB
DeepClustParquet.tar.zst.26 20 GB
DeepClustParquet.tar.zst.27 20 GB
DeepClustParquet.tar.zst.28 20 GB
DeepClustParquet.tar.zst.29 20 GB
DeepClustParquet.tar.zst.30 20 GB
DeepClustParquet.tar.zst.31 20 GB
DeepClustParquet.tar.zst.32 20 GB
DeepClustParquet.tar.zst.33 20 GB
DeepClustParquet.tar.zst.34 20 GB
DeepClustParquet.tar.zst.35 20 GB
DeepClustParquet.tar.zst.36 20 GB
DeepClustParquet.tar.zst.37 20 GB
DeepClustParquet.tar.zst.38 20 GB
DeepClustParquet.tar.zst.39 20 GB
DeepClustParquet.tar.zst.40 20 GB
DeepClustParquet.tar.zst.41 20 GB
DeepClustParquet.tar.zst.42 20 GB
DeepClustParquet.tar.zst.43 20 GB
DeepClustParquet.tar.zst.44 20 GB
DeepClustParquet.tar.zst.45 20 GB
DeepClustParquet.tar.zst.46 20 GB
DeepClustParquet.tar.zst.47 20 GB
DeepClustParquet.tar.zst.48 20 GB
DeepClustParquet.tar.zst.49 20 GB
DeepClustParquet.tar.zst.50 20 GB
DeepClustParquet.tar.zst.51 20 GB
DeepClustParquet.tar.zst.52 20 GB
DeepClustParquet.tar.zst.53 20 GB
DeepClustParquet.tar.zst.54 20 GB
DeepClustParquet.tar.zst.55 20 GB
DeepClustParquet.tar.zst.56 20 GB
DeepClustParquet.tar.zst.57 20 GB
DeepClustParquet.tar.zst.58 20 GB
DeepClustParquet.tar.zst.59 20 GB
DeepClustParquet.tar.zst.60 20 GB
DeepClustParquet.tar.zst.61 20 GB
DeepClustParquet.tar.zst.62 20 GB
DeepClustParquet.tar.zst.63 20 GB
DeepClustParquet.tar.zst.64 20 GB
DeepClustParquet.tar.zst.65 20 GB
DeepClustParquet.tar.zst.66 20 GB
DeepClustParquet.tar.zst.67 20 GB
DeepClustParquet.tar.zst.68 20 GB
DeepClustParquet.tar.zst.69 20 GB
DeepClustParquet.tar.zst.70 20 GB
DeepClustParquet.tar.zst.71 20 GB
DeepClustParquet.tar.zst.72 20 GB
DeepClustParquet.tar.zst.73 20 GB
DeepClustParquet.tar.zst.74 11 GB
arch80_all.tsv.zst 913 MB
arch80_all.tsv.zst.md5sum 53 bytes
centroids.dedup.faa.md5sum 359 bytes
centroids.dedup.faa.readme 375 bytes
centroids.dedup.faa.zst.00 20 GB
centroids.dedup.faa.zst.01 20 GB
centroids.dedup.faa.zst.02 20 GB
centroids.dedup.faa.zst.03 20 GB
centroids.dedup.faa.zst.04 18 GB
clan2acc.tsv.zst 43 KB
clan2acc.tsv.zst.md5sum 51 bytes
clust.dedup2.tsv.md5sum 573 bytes
clust.dedup2.tsv.readme 360 bytes
clust.dedup2.tsv.zst.00 20 GB
clust.dedup2.tsv.zst.01 20 GB
clust.dedup2.tsv.zst.02 20 GB
clust.dedup2.tsv.zst.03 20 GB
clust.dedup2.tsv.zst.04 20 GB
clust.dedup2.tsv.zst.05 20 GB
clust.dedup2.tsv.zst.06 20 GB
clust.dedup2.tsv.zst.07 20 GB
clust.dedup2.tsv.zst.08 12 GB
clust.dedup2.gretq5.eq_NR_id_for_centroid.with_NR_headers_and_UP_info.NR_or_UP_NOT_NA.Aug2025.txt.gz 1.3 GB
clust_bigg2_mmseqs_db.md5sum 335 bytes
clust_bigg2_mmseqs_db.readme 1 KB
clust_bigg2_mmseqs_db.tar.zst.00 20 GB
clust_bigg2_mmseqs_db.tar.zst.01 20 GB
clust_bigg2_mmseqs_db.tar.zst.02 20 GB
clust_bigg2_mmseqs_db.tar.zst.03 20 GB
clust_bigg2_mmseqs_db.tar.zst.04 19 GB
nr_accessions.tsv.zst 3.1 GB
reps_10k.ge2.faa.zst 966 KB
reps_10k.ge3.faa.zst 1.2 MB
reps_1M_ge5.tsv.zst 5.6 MB
deepclust_all_blast.tar.zst.000 20.0 GB
deepclust_all_blast.tar.zst.001 20.0 GB
deepclust_all_blast.tar.zst.002 20.0 GB
deepclust_all_blast.tar.zst.003 20.0 GB
deepclust_all_blast.tar.zst.004 20.0 GB
deepclust_all_blast.tar.zst.005 20.0 GB
deepclust_all_blast.tar.zst.006 20.0 GB
deepclust_all_blast.tar.zst.007 20.0 GB
deepclust_all_blast.tar.zst.008 20.0 GB
deepclust_all_blast.tar.zst.009 20.0 GB
deepclust_all_blast.tar.zst.010 20.0 GB
deepclust_all_blast.tar.zst.011 20.0 GB
deepclust_all_blast.tar.zst.012 20.0 GB
deepclust_all_blast.tar.zst.013 20.0 GB
deepclust_all_blast.tar.zst.014 20.0 GB
deepclust_all_blast.tar.zst.015 20.0 GB
deepclust_all_blast.tar.zst.016 20.0 GB
deepclust_all_blast.tar.zst.017 20.0 GB
deepclust_all_blast.tar.zst.018 20.0 GB
deepclust_all_blast.tar.zst.019 20.0 GB
deepclust_all_blast.tar.zst.020 20.0 GB
deepclust_all_blast.tar.zst.021 20.0 GB
deepclust_all_blast.tar.zst.022 20.0 GB
deepclust_all_blast.tar.zst.023 20.0 GB
deepclust_all_blast.tar.zst.024 20.0 GB
deepclust_all_blast.tar.zst.025 20.0 GB
deepclust_all_blast.tar.zst.026 20.0 GB
deepclust_all_blast.tar.zst.027 20.0 GB
deepclust_all_blast.tar.zst.028 20.0 GB
deepclust_all_blast.tar.zst.029 20.0 GB
deepclust_all_blast.tar.zst.030 20.0 GB
deepclust_all_blast.tar.zst.031 20.0 GB
deepclust_all_blast.tar.zst.032 20.0 GB
deepclust_all_blast.tar.zst.033 20.0 GB
deepclust_all_blast.tar.zst.034 20.0 GB
deepclust_all_blast.tar.zst.035 20.0 GB
deepclust_all_blast.tar.zst.036 20.0 GB
deepclust_all_blast.tar.zst.037 20.0 GB
deepclust_all_blast.tar.zst.038 20.0 GB
deepclust_all_blast.tar.zst.039 20.0 GB
deepclust_all_blast.tar.zst.040 20.0 GB
deepclust_all_blast.tar.zst.041 20.0 GB
deepclust_all_blast.tar.zst.042 20.0 GB
deepclust_all_blast.tar.zst.043 20.0 GB
deepclust_all_blast.tar.zst.044 20.0 GB
deepclust_all_blast.tar.zst.045 20.0 GB
deepclust_all_blast.tar.zst.046 20.0 GB
deepclust_all_blast.tar.zst.047 20.0 GB
deepclust_all_blast.tar.zst.048 20.0 GB
deepclust_all_blast.tar.zst.049 20.0 GB
deepclust_all_blast.tar.zst.050 20.0 GB
deepclust_all_blast.tar.zst.051 20.0 GB
deepclust_all_blast.tar.zst.052 20.0 GB
deepclust_all_blast.tar.zst.053 20.0 GB
deepclust_all_blast.tar.zst.054 20.0 GB
deepclust_all_blast.tar.zst.055 20.0 GB
deepclust_all_blast.tar.zst.056 20.0 GB
deepclust_all_blast.tar.zst.057 20.0 GB
deepclust_all_blast.tar.zst.058 20.0 GB
deepclust_all_blast.tar.zst.059 20.0 GB
deepclust_all_blast.tar.zst.060 20.0 GB
deepclust_all_blast.tar.zst.061 20.0 GB
deepclust_all_blast.tar.zst.062 20.0 GB
deepclust_all_blast.tar.zst.063 20.0 GB
deepclust_all_blast.tar.zst.064 20.0 GB
deepclust_all_blast.tar.zst.065 20.0 GB
deepclust_all_blast.tar.zst.066 20.0 GB
deepclust_all_blast.tar.zst.067 20.0 GB
deepclust_all_blast.tar.zst.068 20.0 GB
deepclust_all_blast.tar.zst.069 20.0 GB
deepclust_all_blast.tar.zst.070 20.0 GB
deepclust_all_blast.tar.zst.071 20.0 GB
deepclust_all_blast.tar.zst.072 20.0 GB
deepclust_all_blast.tar.zst.073 20.0 GB
deepclust_all_blast.tar.zst.074 20.0 GB
deepclust_all_blast.tar.zst.075 20.0 GB
deepclust_all_blast.tar.zst.076 20.0 GB
deepclust_all_blast.tar.zst.077 20.0 GB
deepclust_all_blast.tar.zst.078 20.0 GB
deepclust_all_blast.tar.zst.079 20.0 GB
deepclust_all_blast.tar.zst.080 20.0 GB
deepclust_all_blast.tar.zst.081 20.0 GB
deepclust_all_blast.tar.zst.082 20.0 GB
deepclust_all_blast.tar.zst.083 20.0 GB
deepclust_all_blast.tar.zst.084 20.0 GB
deepclust_all_blast.tar.zst.085 20.0 GB
deepclust_all_blast.tar.zst.086 20.0 GB
deepclust_all_blast.tar.zst.087 20.0 GB
deepclust_all_blast.tar.zst.088 20.0 GB
deepclust_all_blast.tar.zst.089 20.0 GB
deepclust_all_blast.tar.zst.090 20.0 GB
deepclust_all_blast.tar.zst.091 20.0 GB
deepclust_all_blast.tar.zst.092 20.0 GB
deepclust_all_blast.tar.zst.093 20.0 GB
deepclust_all_blast.tar.zst.094 20.0 GB
deepclust_all_blast.tar.zst.095 20.0 GB
deepclust_all_blast.tar.zst.096 20.0 GB
deepclust_all_blast.tar.zst.097 20.0 GB
deepclust_all_blast.tar.zst.098 20.0 GB
deepclust_all_blast.tar.zst.099 20.0 GB
deepclust_all_blast.tar.zst.100 20.0 GB
deepclust_all_blast.tar.zst.101 20.0 GB
deepclust_all_blast.tar.zst.102 14.0 GB
deepclust_reps_blast.tar.zst.000 20.0 GB
deepclust_reps_blast.tar.zst.001 20.0 GB
deepclust_reps_blast.tar.zst.002 20.0 GB
deepclust_reps_blast.tar.zst.003 20.0 GB
deepclust_reps_blast.tar.zst.004 20.0 GB
deepclust_reps_blast.tar.zst.005 13.8 GB